PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G374200.4
Common NamePOPTR_0001s38320g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 331aa    MW: 37041.8 Da    PI: 6.6109
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G374200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.32.6e-11204249550
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                         kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Potri.001G374200.4 204 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 249
                         899**********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.1E-14200264IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703202254IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-12204255No hitNo description
SuperFamilySSF579598.84E-12204258No hitNo description
PfamPF001706.0E-10204248IPR004827Basic-leucine zipper domain
CDDcd147032.74E-23205255No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAQLPPKIPA VTQNWPSFSH QTMSNYFSNA AATMENHQPC WVDEFLDFTS TRRGSHRRSI  60
SDCITFIETT NMPSLVEDQC HDNNNSSSCN NNHSSSNALI SANLGFDKLD DDQLMSMFSH  120
DMSLSLPPSS SNPSTPSDQN SKNDEKPSKP TDQHHHQEEG NTEQQQAAVA KTEPGEVESS  180
CKQEPHQPPL PTSSNNGDTI NDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTTLQTE  240
VSALSPRVAF LDHQRLILNV DNSALKQRIA ALAQDKIFKD AHQEALKKEI ERLRQVYHHQ  300
NLKKMNSSGH AAEAAREQSP NHEAIQCSEN *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G374200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2176440.0AC217644.1 Populus trichocarpa clone POP037-C20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460733.10.0basic leucine zipper 61 isoform X2
SwissprotQ9M2K41e-103BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2K2C9Y20.0A0A2K2C9Y2_POPTR; Uncharacterized protein
STRINGPOPTR_0001s38320.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-97bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]