PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G384000.1
Common NamePOPTR_0001s39260g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 298aa    MW: 31852.8 Da    PI: 6.1108
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G384000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.21.2e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC+ C ++ H        H++vpl
  Potri.001G384000.1  4 QCNVCEAAEANVLCCADEAALCRACDETVHAAnklaskHQRVPL 47
                        7******99*********************66899999999986 PP
2zf-B_box26.51.3e-085390237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                        + +kC+ ++e    +fC +++ llC++C +++H    H
  Potri.001G384000.1 53 QIPKCDICQEAAGFFFCLEDRALLCRKCDVAIHTAntH 90
                        5689******99999******************55553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.978147IPR000315B-box-type zinc finger
CDDcd000211.05E-6347No hitNo description
SMARTSM003362.7E-9447IPR000315B-box-type zinc finger
SMARTSM003362.0E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.835299IPR000315B-box-type zinc finger
PfamPF006433.2E-65490IPR000315B-box-type zinc finger
CDDcd000211.42E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCRACDE TVHAANKLAS KHQRVPLSTS SPQIPKCDIC  60
QEAAGFFFCL EDRALLCRKC DVAIHTANTH VSAHQRFLLT GVKVGLESTD PGASSSPGKS  120
PSGEITTLKT KSCPVSRRGT SMPLASPCNQ VFPANVCGVG EFVPAKLPYS GGSAASSISQ  180
WQIDEFLELA EFNQHYGYMD NGSSKADSGK HGDSDCSAIL RSAEEEVDDE ECLGQVPDSS  240
WAVPQIPSPP TASGLYWPKS IHHSDTAIFV PDICGSAVQN HRHCQQRGTV SKWRQQL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.68990.0bud| catkin
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G384000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827001e-150AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370069.10.0B-box zinc finger protein 22
SwissprotQ9SYM22e-98BBX22_ARATH; B-box zinc finger protein 22
TrEMBLU5GSS00.0U5GSS0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s39260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-97light-regulated zinc finger protein 1