PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G397100.1
Common NamePOPTR_0001s40760g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 280aa    MW: 32022.6 Da    PI: 9.4025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G397100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.4e-13147249194
                         EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                         f+k+lt sd     +rl++ k  a+++       +++ +e++ +t +d++g+++e+ ++++ ++ + vl +GWk F ++++L+ + Dfv++
  Potri.001G397100.1 147 FEKQLTESDLRDDqSRLSINKADAQKYlypllneDENLAEGINVTTYDPNGKEFEMVFKIWVSKIH-VLIGGWKAFFHEHQLRkDQDFVTL 236
                         89***99998776699***************98866667999*****************9**9865.6666***********9899***99 PP

                         EE-SS.SEE..EE CS
                  B3  83 kldgr.sefelvv 94 
                          + +r ++++l++
  Potri.001G397100.1 237 WMFRRlDTEKLCF 249
                         8777766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023623.8E-9147251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-15147250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-14147251IPR015300DNA-binding pseudobarrel domain
CDDcd100178.03E-17147251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEKEDTKLMK LEKMDKDDYP EELREQGAAA LLLSCLLHTR LSCKTALALD KVKSNILGGG  60
KRNQNSHSSR RRPRVSPTQN PGAAVRRNHF DDQQGEGNSN AAARNLPGEP PIRSLEVALR  120
LIENYDPHEV PSIPGLNGII GRCSKPFEKQ LTESDLRDDQ SRLSINKADA QKYLYPLLNE  180
DENLAEGINV TTYDPNGKEF EMVFKIWVSK IHVLIGGWKA FFHEHQLRKD QDFVTLWMFR  240
RLDTEKLCFV INWRRLPGVT TPIKRKRVRM NKSMDQLTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G397100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2798630.0GU279863.1 Populus balsamifera isolate INU03 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798700.0GU279870.1 Populus balsamifera isolate FBK13 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798720.0GU279872.1 Populus balsamifera isolate FRE01 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798740.0GU279874.1 Populus balsamifera isolate RNA13 haplotype A hypothetical protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370221.10.0uncharacterized protein LOC18095551
TrEMBLB9N1E30.0B9N1E3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s40760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Representative plantOGRP1051734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-28B3 family protein