PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.001G409000.1

Common Name

POPTR_0001s41950g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NZZ/SPL

Protein Properties

Length: 322aa MW: 34998.4 Da PI: 8.4686

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G409000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	23.9	7e-08	31	76	36	82
NOZZLE 36 rtetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklv 82 t +r rkp ++ +q ++k+p rgmgva+le +i+e k ++ Potri.001G409000.1 31 TRTTTTTRTRKPAANKCQTRKKQPR-RGMGVAQLENLRIQERWKAIT 76 3336789********99999995.************9988774 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	6.1E-5	31	75	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MATSLSLFLM PSDDRKQEST LAISTEPAEP TRTTTTTRTR KPAANKCQTR KKQPRRGMGV 60 AQLENLRIQE RWKAITETKQ IGSLNLQPTK QLHVFDPFNN NNDDNQMAQY GTTVNHGVPM 120 RNNGVVFNGF LGWDHQGGVV VKRVDEFNAN NNGGFGCQVL VNPYMVGSAP VHQAGAPAPA 180 PAAAVLLEAS KELSSIPKVM QQQKQYEPTR CDLCFKMGGF SARAATSAFY AKYHNHNNNE 240 GVEAMEAHRK GNNAMGSKVI MEYELFPGKN GKSTCFKDME FPTAEASVAV GTGEASCVTT 300 YSDYSASDAS NSIDLSLKLS C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G409000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453954.1	0.0	uncharacterized protein LOC112327023
TrEMBL	B9N561	0.0	B9N561_POPTR; Uncharacterized protein
STRING	POPTR_0001s41950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8365	17	23
Representative plant	OGRP10010	5	8

Link Out ? help Back to Top
Phytozome	Potri.001G409000.1
Entrez Gene	18095670