PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G410600.1
Common NamePOPTR_0001s43950g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 427aa    MW: 46886.6 Da    PI: 6.7275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G410600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86e-063173551154
                         HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Potri.001G410600.1 317 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 355
                         5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.157306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-7316359No hitNo description
SuperFamilySSF474592.22E-11316369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0041317361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-9320363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MADEYTSTNW WDSSASRNRF DSTGSSSTTS GLNSLRSFAW PTEMADVKGR SSMETVSVSD  60
SSVAFHDSQK LQQGHDSSAD LHMMGLGLSS QAMDWNQALL RGDKSENSFR SMLQDNLSSS  120
TNYQQETAGI GSSQSQWRER VFTGVTGDSS MSEFKQMNRG FSLDQPQFSP HGSSSDSTVS  180
CQGLQSSFPM DSSSIYGSPS TMVQGLLISD NQARQSSFEN RPMSYAYGAN YSLGTNELLP  240
SWPKGPQFLR NSPPKQTSSN QLHFSNNTPF WNASASAMND NISEVRDSNI AVKKSGSEAA  300
TKRPRNEIPS SLPSFKVRKE KMGDRITALQ QLVSPFGKTD TASVLSEAIE YIKFLHQQVT  360
VFSTQYMKSG TPILHQQSSD KSKDLEGQKQ DLRSRGLCLV PVSSTFPVTH ETAVDFWTPT  420
FGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G410600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445198.10.0transcription factor bHLH123 isoform X2
SwissprotQ8GXT33e-77BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2K2CBQ90.0A0A2K2CBQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s43950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]