PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G415200.2
Common NamePOPTR_0001s44090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 553aa    MW: 61609.3 Da    PI: 6.1283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G415200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.51.9e-472153591148
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+a+++++ ++ ++l ++ +  +s +g+p+qRl ay+ e+L ar  +s+ ++y++l+++e +    ++ l+++++++e++P+l
  Potri.001G415200.2 215 LKQLLIACAKALAENNVSAFDNLTEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPE---GKDLLSYMHILYEICPYL 302
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                         kf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiT ++
  Potri.001G415200.2 303 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITEFH 359
                         ******************************************************776 PP
2GRAS229.91.2e-70365551186373
                GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                           d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lp
  Potri.001G415200.2 365 APDVTKEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESIDVTLP 455
                         567899************************************************************************************* PP

                GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                         r+ +eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr+++ + y++ e++g+++lgWkdr+L
  Potri.001G415200.2 456 RDRKERISVEQHCLARDMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYS-EHYTLVENDGAMLLGWKDRNL 545
                         *********************************************************************.55******************* PP

                GRAS 368 vsvSaW 373
                         +s+SaW
  Potri.001G415200.2 546 ISASAW 551
                         ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.491189533IPR005202Transcription factor GRAS
PfamPF035146.6E-45215359IPR005202Transcription factor GRAS
PfamPF035144.2E-68365551IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MESHQYFGYG VTGAGLSYSS SYPSVPSIPN RLFGSLKFDI GNSPSSPFYT QFDICDTYTA  60
TLSDSQECYS STDNLSGVSP SRNSSLESNS YFNRPSPSVD CRLESLQLFS GGTSSLQDAS  120
SSQNIKHALQ ELETALMGPD DDEELNTSNA SLGESSSRPQ TSDQKPKAWR QGSHVIQNQT  180
SFVSRQRQLG EGAHVEKRQK SMEEGPLHGI PPGDLKQLLI ACAKALAENN VSAFDNLTEK  240
ARSVVSISGE PIQRLGAYLI EGLVARKESS GANIYRTLKC REPEGKDLLS YMHILYEICP  300
YLKFGYMAAN GAIAEACRNE DRIHIIDFQI AQGTQWMTLL QALAARPSGA PHVRITEFHG  360
VPVFAPDVTK EMLDVRPGEA LAVNFPLQLH HTPDESVDVN NPRDGLLRMI KSFNPKVVTL  420
VEQESNTNTT PFVTRFVETL NYYLAMFESI DVTLPRDRKE RISVEQHCLA RDMVNVIACE  480
GKERVERHEL FRKWKSRFMM AGFQQYPLST YVNSVIKSLL RTYSEHYTLV ENDGAMLLGW  540
KDRNLISASA WH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-532175526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.21850.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G415200.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370596.20.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2K2CBZ30.0A0A2K2CBZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-160GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]