PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G415200.4
Common NamePOPTR_0001s44090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 558aa    MW: 62193.9 Da    PI: 6.0121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G415200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.98.2e-1311875561373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+a+++++ ++ ++l ++ +  +s +g+p+qRl ay+ e+L ar  +s+ ++y++l+++e +    ++ l+++++++e++P+l
  Potri.001G415200.4 187 LKQLLIACAKALAENNVSAFDNLTEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPE---GKDLLSYMHILYEICPYL 274
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++++rL+ + e++++p+ef+ 
  Potri.001G415200.4 275 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVARRLSAISEKFNIPVEFHG 365
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s+
  Potri.001G415200.4 366 -VPVFAPDVTKEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESI 455
                         .6888999*********************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+ +eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr+++ + y++ e++g+++lgW
  Potri.001G415200.4 456 DVTLPRDRKERISVEQHCLARDMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYS-EHYTLVENDGAMLLGW 545
                         **************************************************************************.55************** PP

                GRAS 363 kdrpLvsvSaW 373
                         kdr+L+s+SaW
  Potri.001G415200.4 546 KDRNLISASAW 556
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.145161538IPR005202Transcription factor GRAS
PfamPF035142.8E-128187556IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MESHQYFGYG VTGNSPSSPF YTQFDICDTY TATLSDSQEC YSSTDNLSGV SPSRNSSLES  60
NSYFNRPSPS VDCRLESLQL FSGGTSSLQD ASSSQNIKHA LQELETALMG PDDDEELNTS  120
NASLGESSSR PQTSDQKPKA WRQGSHVIQN QTSFVSRQRQ LGEGAHVEKR QKSMEEGPLH  180
GIPPGDLKQL LIACAKALAE NNVSAFDNLT EKARSVVSIS GEPIQRLGAY LIEGLVARKE  240
SSGANIYRTL KCREPEGKDL LSYMHILYEI CPYLKFGYMA ANGAIAEACR NEDRIHIIDF  300
QIAQGTQWMT LLQALAARPS GAPHVRITGI DDPVSKYARG DGLEAVARRL SAISEKFNIP  360
VEFHGVPVFA PDVTKEMLDV RPGEALAVNF PLQLHHTPDE SVDVNNPRDG LLRMIKSFNP  420
KVVTLVEQES NTNTTPFVTR FVETLNYYLA MFESIDVTLP RDRKERISVE QHCLARDMVN  480
VIACEGKERV ERHELFRKWK SRFMMAGFQQ YPLSTYVNSV IKSLLRTYSE HYTLVENDGA  540
MLLGWKDRNL ISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-621695567377Protein SCARECROW
5b3h_D7e-621695567377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.21850.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G415200.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370596.20.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2K2CBZ30.0A0A2K2CBZ3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]