PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G452200.1
Common NamePOPTR_0001s45650g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 446aa    MW: 48946.6 Da    PI: 7.809
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G452200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.96.4e-31110214199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed +g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g
  Potri.001G452200.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYlpldSSSNEKGLLLNFEDMNGKAWRFRYSYWGSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvG 200
                         89****************************66677899*************************************************6669 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Potri.001G452200.1 201 ElGKDRLYINWRRR 214
                         99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-40102218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-29107198IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-26108197No hitNo description
PROSITE profilePS5086314.819110215IPR003340B3 DNA binding domain
PfamPF023622.5E-28110214IPR003340B3 DNA binding domain
SMARTSM010198.1E-22110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEFGTGFSEG DQMSRGKGLP FSSYSSSNSS PSSSSSQQRN QLVLGQIYEN HQIGSWLGNK  60
YDQVDQDTSR FNESVAVNAA KLDLMDVNDE EEGGRGESSS VQVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYLPLDS SSNEKGLLLN FEDMNGKAWR FRYSYWGSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFQRGVG ELGKDRLYIN WRRRPDAPDD PSRHQHHFHN HHFSAIPWSP  240
LLMRPPTVPV LPRDHLHLSN PNRNTCYKVG GSSYGYGYGN YSNVVNPCSS SGSVFYMTSS  300
AGAGAALEPA PQQVGMGMVQ WQLGGGGVVE PVVYESVPVV QGKAAAKRLR LFGVNMDCPI  360
TDQSDDYGHK LSSTTAAATT LPHNATIALQ PTPQLSSQSL QHPLHQLRLY RGTPLAAMPP  420
STTQFLHKGK SSSPSSSSMS LDLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-641052153114B3 domain-containing transcription factor NGA1
5os9_B2e-641052153114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G452200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519550.0AC151955.2 Populus trichocarpa clone Pop1-041G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370733.10.0B3 domain-containing transcription factor NGA1
SwissprotO827995e-75NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GXP90.0U5GXP9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s45650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-61B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]