PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G008800.2
Common NamePOPTR_0002s00980g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 164aa    MW: 18754 Da    PI: 4.6658
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G008800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.21.4e-1341841957
                        HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        Fe+ n +p ++++++++++l    +++e++V++WFqNrRa+ k+
  Potri.002G008800.2 41 FEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 84
                        8888**************************************97 PP
2Wus_type_Homeobox66.26.5e-2239861865
   Wus_type_Homeobox 18 elyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++++   tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
  Potri.002G008800.2 39 LIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 86
                        379*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000869.76E-91886No hitNo description
Gene3DG3DSA:1.10.10.607.1E-111888IPR009057Homeodomain-like
SMARTSM003890.00172289IPR001356Homeobox domain
PfamPF000463.2E-114184IPR001356Homeobox domain
PROSITE profilePS5007111.8234185IPR001356Homeobox domain
SuperFamilySSF466896.84E-114187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEEGRFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLI FEQCNATPGR QKIKDITREL  60
AQHGQISETN VYNWFQNRRA RSKRKQSAVV PNNGESEMET DIESLKEKKT RAEDSQPDEN  120
TTPMADHMYF NSPDIGFDQL MGKIESPGSC IPYWQMEQYD LFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G008800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0108100.0AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301917.11e-111WUSCHEL-related homeobox 8
SwissprotQ5QMM33e-33WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLB9GQ011e-110B9GQ01_POPTR; WOX family protein
STRINGPOPTR_0002s00980.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-31WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]