PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G008800.3

Common Name

POPTR_0002s00980g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 162aa MW: 18466.7 Da PI: 5.7267

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G008800.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.7	6.4e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+ Potri.002G008800.3 22 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	96.5	2.1e-31	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Potri.002G008800.3 21 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 84 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.48E-18	17	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-18	17	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.738	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.6E-13	20	87	IPR001356	Homeobox domain
CDD	cd00086	9.14E-14	22	84	No hit	No description
Pfam	PF00046	1.3E-18	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGLGNPYCDP LLSSAVHKIG SRQRWTPKPA QLQILEQIFE QCNATPGRQK IKDITRELAQ 60 HGQISETNVY NWFQNRRARS KRKQSAVVPN NGESEMETDI ESLKEKKTRA EDSQPDENTT 120 PMADHMYFNS PDIGFDQLMG KIESPGSCIP YWQMEQYDLF G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G008800.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010810	0.0	AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301917.1	1e-120	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	8e-44	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9GQ01	1e-119	B9GQ01_POPTR; WOX family protein
STRING	POPTR_0002s00980.1	1e-120	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-42	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Potri.002G008800.3
Entrez Gene	7474570

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]