PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G023400.2
Common NamePOPTR_0002s02500g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 431aa    MW: 48523.2 Da    PI: 6.0881
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G023400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP855.9e-27160224170
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                         r+++sL+llt+kf+kl++++++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwk
  Potri.002G023400.2 160 RYDSSLGLLTKKFVKLIKEAQDGTLDLNKTAEVL---EV--QKRRIYDITNVLEGIGLIEKTSKNHIRWK 224
                         6899******************************...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-27157224IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-17160223IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.9E-34160225IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-25162224IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440746.8E-25238340No hitNo description
CDDcd146601.72E-34240340No hitNo description
PfamPF164212.0E-21242338IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MANASEDPNR TINPSQFHFH LLHSHSHFQN QNLFSSSNNS TPSNRLFPSS FRKPHHLPPP  60
PPDNNKTPIG FQFHSSNTHS AFRDVALGIK SESDDHEVWT NRDAAFPAQS DIVTDITLAP  120
RSSSGGKHKN KSRVPKHAKS VTQRMNAESL NGLNLASGCR YDSSLGLLTK KFVKLIKEAQ  180
DGTLDLNKTA EVLEVQKRRI YDITNVLEGI GLIEKTSKNH IRWKKEFDDC EQRMLDNHAR  240
IKAEVESLYT EEFRLEEAIR DRQELLRGLK EDVVCRKHLF LTEEDITSLS CFQNRTLFAI  300
KTPEASYLEV PDPDEDIGSP LYKMTVRSTN GPIDVYLLSK CKQGEDITAE HVEPMDTSAW  360
NSSQCRDQDA GLPSECQGNQ NSCCEPFSSL TLEASGICKL IPADCNIIDD YWFTTDDSVS  420
ISKLWVDRIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22160224772PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G023400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450667.10.0transcription factor E2FC
TrEMBLA0A2K2BC950.0A0A2K2BC95_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.11e-89E2F/DP family protein