PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G026700.2
Common NamePOPTR_0002s02820g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BBR-BPC
Protein Properties Length: 337aa    MW: 37384 Da    PI: 9.7837
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G026700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind392.27.3e-12013361301
           GAGA_bind   1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                         mdd g+re  r+k+ +y+         p++s+k     q+m+++aerda+i+ern+alsekkaa+aerdmaflqrd+a+aern+al+erdn
  Potri.002G026700.2   1 MDDGGHREngRHKAdQYKtaqgqwlmqPQPSMK-----QIMAIMAERDAAIHERNMALSEKKAAIAERDMAFLQRDSAIAERNNALLERDN 86 
                         9*****999*****9***776666654445555.....***************************************************** PP

           GAGA_bind  80 kllalllvensla....salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
                         ++++l+++ensl     +++p+g + ++g+k++++ qq +++  p++++ ++++re+++++alp++    +a+e++k+++++r+k++   k
  Potri.002G026700.2  87 AIATLQYRENSLPsgnmTTCPPGFHNSRGVKHMHHQQQqHTHhlPHMNEGPYGTREMQTSDALPVSP---VASEVAKPQRGKRPKDA---K 171
                         **********987888899***************99994334799*******************876...55566666644455444...4 PP

           GAGA_bind 164 akkkkkksekskkkvkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
                         a+  +kk++ks +kvk+es+d++                           sk+++k +dl+ln+v++De+t+P+PvCsCtG+ rqCYkWGn
  Potri.002G026700.2 172 ATPSNKKTSKSPRKVKRESDDTDmfgkshewkngqdmdgggddpnkqlaaSKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGN 262
                         44444445566667777776644577889999*********************************************************** PP

           GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                         GGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti+
  Potri.002G026700.2 263 GGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336
                         *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.3E-1951336IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-1051336IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDGGHRENG RHKADQYKTA QGQWLMQPQP SMKQIMAIMA ERDAAIHERN MALSEKKAAI  60
AERDMAFLQR DSAIAERNNA LLERDNAIAT LQYRENSLPS GNMTTCPPGF HNSRGVKHMH  120
HQQQQHTHHL PHMNEGPYGT REMQTSDALP VSPVASEVAK PQRGKRPKDA KATPSNKKTS  180
KSPRKVKRES DDTDMFGKSH EWKNGQDMDG GGDDPNKQLA ASKSDWKGQD LGLNQVAFDE  240
TTMPAPVCSC TGVFRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHARV GGRKMSGSAF  300
SKLLSRLAAE GQDLSNPVDL KDHWAKHGTN RYITIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.24290.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G026700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822630.0FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301996.20.0protein BASIC PENTACYSTEINE6
RefseqXP_024451553.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-157BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLB9GQZ00.0B9GQZ0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s02820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-158basic pentacysteine 6