PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G028500.2
Common NamePOPTR_0002s03000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SRS
Protein Properties Length: 319aa    MW: 34930.4 Da    PI: 8.3125
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G028500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.13.3e-70932484153
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsa 85 
                         g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++         + +++kr+re+ +  +s+
  Potri.002G028500.2  93 GGMNCQDCGNQAKKDCPHSRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQEQQqqqqqqqqfRGENPKRQREN-QGGASS 182
                         789***************************************************999888776655554433333333344433.445566 PP

              DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         l++t+l+++  ++ le++ +P+ev+s+avfrcv+vs++dd+e++laYqtav+igGhvf+GiLydqG++
  Potri.002G028500.2 183 LACTRLATT--TSGLEMTAFPPEVNSQAVFRCVKVSALDDAEDQLAYQTAVNIGGHVFRGILYDQGPD 248
                         666666555..56789999***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-6794248IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-2696138IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.2E-26199247IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAGWFYLGER EGPSSKQDQE KEVNNSSLFL YRSSNEEIYN NNKGFELWPQ YYPQQQNMNS  60
FSFGVGPSRR NFSDDHSPRS GFTVMRQGGG LGGGMNCQDC GNQAKKDCPH SRCRTCCKSR  120
GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ QNQEQQQQQQ QQQQFRGENP KRQRENQGGA  180
SSLACTRLAT TTSGLEMTAF PPEVNSQAVF RCVKVSALDD AEDQLAYQTA VNIGGHVFRG  240
ILYDQGPDGR YTSTGGESSS SGAQQLGLIT AATTSTTATT TNTGNPAAGN TLFDPSSLYP  300
APLNAFIAGT QFFPPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G028500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0119661e-126AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450682.10.0protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ51e-101SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A2K2BCI10.0A0A2K2BCI1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.19e-87SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]