PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G029400.1
Common NamePOPTR_0002s03090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 241aa    MW: 26478.6 Da    PI: 5.3596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G029400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-194089255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         ykGVr++  +g+WvAeIr+p   + r +r +lg+++t  eAa a++aa++kl+g
  Potri.002G029400.1 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTYDTSHEAAMAYDAAARKLYG 89
                        69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.07E-223999No hitNo description
Gene3DG3DSA:3.30.730.102.0E-304098IPR001471AP2/ERF domain
PROSITE profilePS5103222.4054097IPR001471AP2/ERF domain
PfamPF008472.0E-144089IPR001471AP2/ERF domain
SMARTSM003803.9E-3740103IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-214097IPR016177DNA-binding domain
PRINTSPR003671.5E-94152IPR001471AP2/ERF domain
PRINTSPR003671.5E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSKSIMSGFG EKKQFKKPEQ ASSRKGCMRG KGGPENALCT YKGVRQRTWG KWVAEIREPN  60
RGARLWLGTY DTSHEAAMAY DAAARKLYGP EAKLNLPELQ VNSSQFPASP ANSQVIQMTN  120
QPSHLIQNSS PTSTYSSNIP NMESNEAKPI LYNHNPIMSF SNESVDSNGM EVENDANFGR  180
SGDVIKEFSA NLNVNMTFND SIWAEAALSI NFPVMDDPGI FASNLMEESG GDTMQTPWCM  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1841105670ATERF1
3gcc_A3e-1841105670ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G029400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302006.20.0dehydration-responsive element-binding protein 2D
TrEMBLB9GRH71e-180B9GRH7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03090.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-51ERF family protein