PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G035000.1
Common NamePOPTR_0002s03640g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 100aa    MW: 11120.4 Da    PI: 9.6945
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G035000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.2e-091356344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++
  Potri.002G035000.1 13 SWTAKQNKLFEKALAVYDKDtpdRWQNVAKAVG-GKSPEEVKRHY 56
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.724964IPR017884SANT domain
SMARTSM007171.3E-81062IPR001005SANT/Myb domain
SuperFamilySSF466897.02E-131268IPR009057Homeodomain-like
PfamPF002494.4E-71356IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-41358IPR009057Homeodomain-like
CDDcd001674.76E-71460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSYFTSSTGS GSSWTAKQNK LFEKALAVYD KDTPDRWQNV AKAVGGKSPE EVKRHYDRLV  60
EDLVYIESGQ APLPNYKPSG SNGRGLVEEQ RLTRNLKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-37499193RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G035000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300766.22e-68protein RADIALIS-like 3
SwissprotQ1A1732e-38RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K2BCW94e-67A0A2K2BCW9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03640.13e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-39RAD-like 6