PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G037100.2
Common NamePOPTR_0002s03830g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 229aa    MW: 26308.5 Da    PI: 5.9561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G037100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1027.9e-3228645129
                 NAM  45 wdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         w+L+  +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+  ++e+vg++ktLvfyk+rap+g kt W+mhe+rle
  Potri.002G037100.2   2 WNLE-VAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPtTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 86 
                         7786.4455779**************************************977888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.4821104IPR003441NAC domain
SuperFamilySSF1019412.75E-386104IPR003441NAC domain
PfamPF023653.4E-151485IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MWNLEVAKLN ATEWYFFSFR DRKYATGFRT NRATTSGYWK ATGKDRTVLD PTTREVVGMR  60
KTLVFYKNRA PNGIKTGWIM HEFRLETPHM PPKEDWVLCR VFHKSKAEDS TRFMFESTTD  120
SGSTVNLTAS PFTADHQTLA RGYQQMISLS STPPHQDQTS LLNLLQLSQD RNSKYPMDTD  180
ISSKAVDEYG FLWDDMNLEE NSLGDGVVAS NLEDMRFEID HNSMDVFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-28710466165NO APICAL MERISTEM PROTEIN
1ut4_B3e-28710466165NO APICAL MERISTEM PROTEIN
1ut7_A3e-28710466165NO APICAL MERISTEM PROTEIN
1ut7_B3e-28710466165NO APICAL MERISTEM PROTEIN
3swm_A4e-28710469168NAC domain-containing protein 19
3swm_B4e-28710469168NAC domain-containing protein 19
3swm_C4e-28710469168NAC domain-containing protein 19
3swm_D4e-28710469168NAC domain-containing protein 19
3swp_A4e-28710469168NAC domain-containing protein 19
3swp_B4e-28710469168NAC domain-containing protein 19
3swp_C4e-28710469168NAC domain-containing protein 19
3swp_D4e-28710469168NAC domain-containing protein 19
4dul_A3e-28710466165NAC domain-containing protein 19
4dul_B3e-28710466165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in the root tip and in lateral root initiation sites. Also detected in expanding cotyledon, and in leaf primordia. {ECO:0000269|PubMed:11114891}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G037100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300772.31e-159protein CUP-SHAPED COTYLEDON 2
SwissprotQ84TE61e-42NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2K2BCZ71e-158A0A2K2BCZ7_POPTR; NAC family protein
STRINGPOPTR_0002s03830.11e-172(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-63NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]