PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G039200.1
Common NamePOPTR_0002s04030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 143aa    MW: 16522.1 Da    PI: 5.7542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G039200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-192171356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f+taeeAa+a+++a+ +++g+
  Potri.002G039200.1 21 YRGIRRRP-WGKFAAEIRDPTRNG--TRRWLGTFDTAEEAARAYDRAAFAFRGH 71
                        9*******.**********98887..999**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-362084IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-232079IPR016177DNA-binding domain
PROSITE profilePS5103224.52078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-312080IPR001471AP2/ERF domain
CDDcd000183.47E-302179No hitNo description
PRINTSPR003674.1E-112132IPR001471AP2/ERF domain
PfamPF008475.1E-132171IPR001471AP2/ERF domain
PRINTSPR003674.1E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
METYQGEKNT KKQEKRRENA YRGIRRRPWG KFAAEIRDPT RNGTRRWLGT FDTAEEAARA  60
YDRAAFAFRG HLAILNFPNE YQHQETNSTM SFASSSSFST ENPLSYGNEV SSTNGQEVIE  120
FEYLDNKLLE ELLETDDHSR QL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-292112815114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11027KKQEKRRENAYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G039200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300780.11e-102ethylene-responsive transcription factor ERF098
SwissprotQ9LTC52e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9GS211e-101B9GS21_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04030.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-34ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]