PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G041600.1
Common NamePOPTR_0002s04250g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 185aa    MW: 20759.3 Da    PI: 4.7959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G041600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00023355123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H++ H
  Potri.002G041600.1 33 YECVFCKRGFTTAQALGGHMNIH 55
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-63159No hitNo description
Gene3DG3DSA:3.30.160.603.0E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESNQHDEDS KSSSDEEEIT DRSDQDTGTG RSYECVFCKR GFTTAQALGG HMNIHRKDRA  60
KSRPSSVPSL SSKVDEDYAS FQGYPPIQSY PPHYPTPHEV HINYQTFFPA STTWGIGSPY  120
AQQHNGDFYV QSPHHLYPFG DDWRRSLSLQ TGPSHVDDNT KEKIEDGIGA DDELDLELRL  180
GHDP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G041600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2083750.0AC208375.1 Populus trichocarpa clone JGIACSB249-H15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302060.11e-136protein LATE FLOWERING
TrEMBLB9GS391e-135B9GS39_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04250.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16863073
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-14C2H2 family protein