PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G042000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 504aa    MW: 54943.1 Da    PI: 7.038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G042000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13358404455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Potri.002G042000.1 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 404
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.6E-4448231IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-18357426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-14357407No hitNo description
PfamPF000102.9E-10358404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17358424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-15360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MGEKFWVKEE NRMVESVLGV EACEFLITSA SKNILNDLVS PPVNLGVQQG LGKVVEGSHW  60
NYVIFWYASG LKSGGSILVW GDGICQDPKG GGVVHGSSSG DGKLEGVEKR KVKKCVLRKL  120
HACFNGSDDG SFAASLDEVS DVEMFYLTSM YFTFRCDSAY GPGEAFKSGR SIWASSMPSC  180
LDHYQLRSVL ARSAGFQTVV FLPVKSGVLE LGSVKSIPEE HDFVEKAKGL FGASNNAQAK  240
AVPKIFGREL SLGGSKSRSI SINFSPKVED ELVFTSESYA MKATSTNQVY GSTSNGRPSD  300
KSEAKLFPHL NQAIVGFNTE TVVGGLEQPN DDLSPQGDER KPRKRGRKPA NGREEPLNHV  360
EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQKKIGAL ETERGVVNNN  420
QKQLPVPEID FQPGQDDAVV RASCPLDSHP VSSIIETFRE HQITAQECNV SMEGDKIVHT  480
FSIRTPSGAA EQLKEKLEAA LSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-29352419269Transcription factor MYC2
5gnj_B7e-29352419269Transcription factor MYC2
5gnj_E7e-29352419269Transcription factor MYC2
5gnj_F7e-29352419269Transcription factor MYC2
5gnj_G7e-29352419269Transcription factor MYC2
5gnj_I7e-29352419269Transcription factor MYC2
5gnj_M7e-29352419269Transcription factor MYC2
5gnj_N7e-29352419269Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339347RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.103150.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G042000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451240.10.0transcription factor bHLH3
SwissprotA0A3Q7H2160.0MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A2K2BD820.0A0A2K2BD82_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-166bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]