PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G043300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 213aa    MW: 23866.3 Da    PI: 9.9712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G043300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-2070119255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g
  Potri.002G043300.1  70 HFRGVRKRP-WGRFAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 119
                         69*******.**********883....5999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3069127IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-2170127IPR016177DNA-binding domain
PfamPF008471.6E-1270119IPR001471AP2/ERF domain
SMARTSM003801.7E-3370133IPR001471AP2/ERF domain
CDDcd000187.00E-3070126No hitNo description
PROSITE profilePS5103221.56270127IPR001471AP2/ERF domain
PRINTSPR003678.6E-107182IPR001471AP2/ERF domain
PRINTSPR003678.6E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MYPPLTFNLY TFSSPRTKTT LSYTLTLYGA LTTMAVDAWR RRNDTVTTTL SLAGPPAPPT  60
PAVENEPQRH FRGVRKRPWG RFAAEIRDPW KKTRRWLGTF DTAEEAALAY DEAARSLRGP  120
KARTNFFHRD HLAPLPFLQT TVVGAGGLKI WCSPVFLSDE VSRMAAPTAV APVRSEYQGY  180
KIESVDENVG LVLNEEKQRP LLFDLNLPAP LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1969126462ATERF1
3gcc_A1e-1969126462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G043300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300797.11e-129ethylene-responsive transcription factor 9
SwissprotQ9FE672e-28ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A3N7ENU21e-128A0A3N7ENU2_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04430.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-23erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]