PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G045800.4
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 384aa    MW: 41842.6 Da    PI: 5.2852
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G045800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1506.4e-16290344458
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         +kr+rr+q+NRe+ArrsR+RK+a++ eLe+ v +L  e+++L ++    +++++ 
  Potri.002G045800.4 290 VKRARRMQSNRESARRSRRRKQAQLNELETQVGQLRDERTSLLSRFTDVNQKCDD 344
                         69*******************************************9999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-15287351IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.645289341IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.1E-10290340No hitNo description
PfamPF001709.9E-13290343IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-10291342No hitNo description
PROSITE patternPS000360294309IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MNSVFSVDDF SDPFWLSPPP PPSSTDPKMN RSESEWAFEN FLQEMASVPS SASETHTAAP  60
SVLSQSSTSS IPPDNGEDEV VEITKHPIHH HHQHPIPNPH PIPNPHPQPL DRNLTAPIDS  120
EEYRALLKSK LDLACAAVAM SMETNAVKPE VFSSLPEDQR LAARNMSLGT QSFHNGTDQG  180
ISMAQSGADG VSLGIPPLLT TQRKSDDESL GIPALPTTQR KSDDESLGIP ALPTTQRKSD  240
GGSLGIPALP ITQRKQEVQA RQTTSGSSSS DDDDLEGDTG TNENMDPAVV KRARRMQSNR  300
ESARRSRRRK QAQLNELETQ VGQLRDERTS LLSRFTDVNQ KCDDAAVDNR ILKADIETLR  360
AKVSRCTSPI LTLFVALRVP LVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303310RRSRRRKQ
2305310SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.107091e-134leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G045800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470421e-131EF147042.1 Populus trichocarpa clone WS01226_K01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300809.30.0light-inducible protein CPRF2
TrEMBLA0A2K2BDD90.0A0A2K2BDD9_POPTR; BZIP family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.14e-28basic leucine zipper 25