PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G048200.2
Common NamePOPTR_0002s04900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 331aa    MW: 38122.2 Da    PI: 6.1939
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G048200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35461372102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+ +++++sws+ g sfvv+d+ +f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+
  Potri.002G048200.2  46 FLTKTFDMVDDPMTNHIVSWSRGGFSFVVWDPYSFSANLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQKQ 127
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+k 
  Potri.002G048200.2 128 LLRNIKRRKA 137
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.4E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.26E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.8E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MNPYLTVKQE YAGSSLLPLS GGDEPPTMML PPQPMEGLHD TGPPPFLTKT FDMVDDPMTN  60
HIVSWSRGGF SFVVWDPYSF SANLLPRYFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FLRGQKQLLR NIKRRKAASQ PLSQQQAPDA CVEVSRFGLD GEIDLLKRDR HVLMMELAKL  180
RQQQQKARSY IQAMEQRLQG TEQKQQQMMQ FLARAMQNPA FLLQLVQQKG KRKELEEAMT  240
KKRRIPVDQR PSRMSELEAL ALEMQGYGRA RREQEDGVEE LEPLESGDRE LDEGFWEELL  300
NESAGGGEDE DVNTLAERLG YLRSSPKYRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254413818123Heat shock factor protein 1
5d5u_B1e-254413527129Heat shock factor protein 1
5d5v_B1e-254413527129Heat shock factor protein 1
5d5v_D1e-254413527129Heat shock factor protein 1
5hdg_A1e-25441358110Heat shock factor protein 1
5hdn_A1e-25441358110Heat shock factor protein 1
5hdn_B1e-25441358110Heat shock factor protein 1
5hdn_C1e-25441358110Heat shock factor protein 1
5hdn_D1e-25441358110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G048200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139880.0KP013988.1 Populus simonii heat shock transcription factor A7a2 (HsfA7a2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450269.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-116HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLB9GSI70.0B9GSI7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s04900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B