PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G054100.2
Common NamePOPTR_0002s05510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 681aa    MW: 76476.7 Da    PI: 4.5597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G054100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.8e-14460505454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  Potri.002G054100.2 460 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 505
                         7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.7E-579191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-19458524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-19460524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-15460510No hitNo description
PfamPF000101.7E-11460505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAAPLSSRLQ TMLQAAVQSV QWTYSLFWQM CPQQGILVWG DGYYNGPIKT RKTVQPMEVS  60
TEEASLQRSQ QLRELYDSLS IGETNQPERR PCAALSPEDL TETEWFYLMC VSFSFSPGAG  120
LPGKAYDRKQ HVWLTGANDI DSKTFSRAIL AKSAGVQTVV CIPLLDGVVE FGTTDKVKED  180
LGFIQHVKSF FSDHHHLPPP KPALSEHSTS NPATSSDHPY LYSPPIPPFY VAADPPANAG  240
QMNEDDEEEE EDEEDDEDDE EDQESDSEAE TSREALLEPC QAQNPLQVAV VEPSELMQLE  300
MSEGIRLGSP DDGSNNLDVD FPLINPESLM DHQSRADSFR TESARRWAPM LQDNPFKDTH  360
YSQTVSTILQ NQTIELAAEP SLNAYEAYSN QSAFAKWMNL TDHCLNVPVE TTSQWLLKYI  420
LFTVPYLHSK YREENSPKSR DGDATNKFRK GTPQDELSAN HVLAERRRRE KLNERFIILR  480
SLVPFVTKMD KASILGDTIE YVKQLLKKIQ DLEACNKQME SEQRSRSVDP PQTITTSTSL  540
KEQNNGITVV DRARSVGPGS DKRKMRIVED YTTGRAQPKS VDSLPSPEPM VDVEPEISVE  600
VSIIESDALI ELKCGYREGL LLDIMQMLRE LRIETIAVQS SSNNGIFVGE LRAKVKENVS  660
GKKLSIVEVK RAIRQIIPHD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2251929193Transcription factor MYC3
4rqw_B1e-2251929193Transcription factor MYC3
4rs9_A1e-2251929193Transcription factor MYC3
4yz6_A1e-2251929193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464469ERRRRE
2465470RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G054100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9097570.0KJ909757.1 Populus tremula x Populus tremuloides clone INRA 353-38 basic helix-loop-helix transcription factor (bHLH131) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451876.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2BDU70.0A0A2K2BDU7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]