PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G054100.3
Common NamePOPTR_0002s05510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 644aa    MW: 71947.2 Da    PI: 4.4235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G054100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-14423468454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  Potri.002G054100.3 423 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 468
                         7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.4E-396135IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625419468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19421487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11423468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.13E-15423473No hitNo description
Gene3DG3DSA:4.10.280.102.5E-19423487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-17425474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEVSTEEASL QRSQQLRELY DSLSIGETNQ PERRPCAALS PEDLTETEWF YLMCVSFSFS  60
PGAGLPGKAY DRKQHVWLTG ANDIDSKTFS RAILAKSAGV QTVVCIPLLD GVVEFGTTDK  120
VKEDLGFIQH VKSFFSDHHH LPPPKPALSE HSTSNPATSS DHPYLYSPPI PPFYVAADPP  180
ANAGQMNEDD EEEEEDEEDD EDDEEDQESD SEAETSREAL LEPCQAQNPL QVAVVEPSEL  240
MQLEMSEGIR LGSPDDGSNN LDVDFPLINP ESLMDHQSRA DSFRTESARR WAPMLQDNPF  300
SGSLQPSASG SPTLEDLAQE DTHYSQTVST ILQNQTIELA AEPSLNAYEA YSNQSAFAKW  360
MNLTDHCLNV PVETTSQWLL KYILFTVPYL HSKYREENSP KSRDGDATNK FRKGTPQDEL  420
SANHVLAERR RREKLNERFI ILRSLVPFVT KMDKASILGD TIEYVKQLLK KIQDLEACNK  480
QMESEQRSRS VDPPQTITTS TSLKEQNNGI TVVDRARSVG PGSDKRKMRI VEDYTTGRAQ  540
PKSVDSLPSP EPMVDVEPEI SVEVSIIESD ALIELKCGYR EGLLLDIMQM LRELRIETIA  600
VQSSSNNGIF VGELRAKVKE NVSGKKLSIV EVKRAIRQII PHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-131113674193Transcription factor MYC3
4rqw_B3e-131113674193Transcription factor MYC3
4rs9_A3e-131113674193Transcription factor MYC3
4yz6_A3e-131113674193Transcription factor MYC3
5gnj_A5e-14423485870Transcription factor MYC2
5gnj_B5e-14423485870Transcription factor MYC2
5gnj_E5e-14423485870Transcription factor MYC2
5gnj_F5e-14423485870Transcription factor MYC2
5gnj_G5e-14423485870Transcription factor MYC2
5gnj_I5e-14423485870Transcription factor MYC2
5gnj_M5e-14423485870Transcription factor MYC2
5gnj_N5e-14423485870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427432ERRRRE
2428433RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G054100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451876.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2K2BDV70.0A0A2K2BDV7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05510.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-69bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]