PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G058800.1

Common Name

POPTR_0002s05980g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 275aa MW: 30354.1 Da PI: 9.9081

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G058800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	67.1	2.6e-21	17	58	7	48
RWP-RK 7 ledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 e +sk+Fslp+ dAA++Lgvc++vLK+iCR +G++RWP+Rk Potri.002G058800.1 17 WEAISKHFSLPLSDAANNLGVCVSVLKKICRDNGLDRWPYRK 58 689**************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.971	1	81	IPR003035	RWP-RK domain
Pfam	PF02042	8.2E-20	17	58	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MNIQQQQQPN QSKPPSWEAI SKHFSLPLSD AANNLGVCVS VLKKICRDNG LDRWPYRKYL 60 AGKSIEDIRR YAAREKIKAI ADLAKAANKS GIQQQNNENS KPHKLQQQGT KDVLVGRQHI 120 TLTPGLAKGL MGLDEFKYGF PSDGLSTATN KWWGSSLSDT QRATDRAGIE TDEDDGRQSE 180 EKVDAGTSVV IVDEEKGENG KMESNEIDPQ GTGLLTSVRK RAAEEGREAL KLGVYRTYGV 240 NKLGRKQRAL LLRIFGSSLP KQWIQDFSSN RGGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G058800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148594	0.0	EF148594.1 Populus trichocarpa x Populus deltoides clone WS0134_I13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002300875.1	0.0	uncharacterized protein LOC7468732
TrEMBL	B9GT26	0.0	B9GT26_POPTR; Nin-like family protein
STRING	POPTR_0002s05980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13122	3	3
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	3e-10	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Potri.002G058800.1
Entrez Gene	7468732