PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G067400.1
Common NamePOPTR_0002s06800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 315aa    MW: 34846.9 Da    PI: 5.1186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G067400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.43.6e-14232286357
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                         + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L ke ee +ke  
  Potri.002G067400.1 232 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKEERTKERF 286
                         679***************************************9999887776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.5E-12227290No hitNo description
SMARTSM003384.1E-10230294IPR004827Basic-leucine zipper domain
PfamPF001701.3E-12232289IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.978232284IPR004827Basic-leucine zipper domain
CDDcd147077.98E-18234280No hitNo description
SuperFamilySSF579591.83E-9235283No hitNo description
PROSITE patternPS000360237252IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MASSKVMASS KPRNSDPSST TSSRSRRATS SSSATNTTAK PAYQSTDRLF QKESTMTVDG  60
ILRSVYASPS TESTLLDAQI TLMESPDHLP HPQIETDDTD DQDMSDIIPQ ENKTADDIWR  120
EIVVGRKEMK DEPDEMMTLE DFLAKAGAVD VVGEDGDEVK MPPPERLSGG LYAFDSLPPS  180
SFQVLDKEEG SIVGFGNGVE VELVAGSGGG GSGGGRGKRG RGVAMEPLDK AAQQRQRRMI  240
KNRESAARSR ERKQAYQVEL ESLAVRLEEE NEQLLKEKEE RTKERFKQLM EKVVPVVEKR  300
RPRRALRRVN SLQW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.5752e-69leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G067400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386309.10.0G-box-binding factor 4 isoform X1
SwissprotP427772e-55GBF4_ARATH; G-box-binding factor 4
TrEMBLU5GP200.0U5GP20_POPTR; Uncharacterized protein
STRINGPOPTR_0002s06800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Representative plantOGRP8662715
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.16e-41bZIP family protein