PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G079000.2
Common NamePOPTR_0002s07920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 19078 Da    PI: 9.1118
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G079000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+snrqvt+skRr gi+KKA+E+ vLCda+v+++if+s+g+++ey+s
  Potri.002G079000.2  9 KRIENSSNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEYCS 59
                        79***********************************************96 PP
2K-box73.94.6e-2571151181
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                         y+k+sgk+l++ak+e+l++e++++kke+e++q e+Rhl+G+d++sL +keL+ +e++L+++l  +R+k++e+  +  ++ +
  Potri.002G079000.2  71 YHKQSGKRLWDAKHENLSNEIDRIKKENESMQIELRHLKGQDISSLPHKELMAIEEALDTGLAAVRKKQMEFHSMLEQNEK 151
                         8999******************************************************************97544444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-35296IPR002100Transcription factor, MADS-box
CDDcd002655.60E-39280No hitNo description
PRINTSPR004043.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-1782161IPR002487Transcription factor, K-box
PROSITE profilePS5129712.41784165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRSGIIK KAKEITVLCD AQVSLVIFAS SGRMHEYCSP  60
STTVVDLLDK YHKQSGKRLW DAKHENLSNE IDRIKKENES MQIELRHLKG QDISSLPHKE  120
LMAIEEALDT GLAAVRKKQM EFHSMLEQNE KILDEEFKHL QFVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-17191183MEF2 CHIMERA
6bz1_B3e-17191183MEF2 CHIMERA
6bz1_C3e-17191183MEF2 CHIMERA
6bz1_D3e-17191183MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.124320.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G079000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0291720.0EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300964.11e-118floral homeotic protein PMADS 2
SwissprotQ0HA251e-98MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB9GU031e-117B9GU03_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07920.11e-118(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]