PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G100100.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 312aa    MW: 35451.2 Da    PI: 10.5085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G100100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09142189455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.002G100100.1 142 SHSLVERVRREKISERMKLLQDLVPGC----NKVTGKAFMLDEIINYVQSLQ 189
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15135195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-8136193No hitNo description
PROSITE profilePS5088815.199138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-16139193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF001253.6E-8193252IPR007125Histone H2A/H2B/H3
SuperFamilySSF471134.05E-11193254IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.2E-19194255IPR009072Histone-fold
SMARTSM004281.7E-4203284IPR000164Histone H3/CENP-A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MQNRLVAYRY EFPIEPTDLG KGFPENKQEL TGLSKGFLEN MLVSKDMPSN LQAPATTTLL  60
VILSDEPPNH KPRLGSKWHL LTKSGHREQN SGVNFDLKEL VGIVQKRCWA SMFVSDIQNK  120
ANSKPPEDYI HVRARKGQAT DSHSLVERVR REKISERMKL LQDLVPGCNK VTGKAFMLDE  180
IINYVQSLQR QVEVARKAAK TTGGVKKPNG YRPRIHKYQK STELLIRKLP FQRLSQNFKA  240
DFRFQSQAVL ALPRQLKHAL LDCLRILIFV QSLPCGLLSC LGMFSLPGEP VNRQIFDKTD  300
ASRRVYGIVW V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3a6n_A9e-191892522396Histone H3.1t
3a6n_E9e-191892522396Histone H3.1t
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.141061e-103stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G100100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451498.11e-128uncharacterized protein LOC18096237
TrEMBLA0A3N7EI321e-127A0A3N7EI32_POPTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.14e-39bHLH family protein