PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G101900.1
Common NamePOPTR_0002s10230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 327aa    MW: 36715.4 Da    PI: 5.6734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G101900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.3e-13128179155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Potri.002G101900.1 128 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 179
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.06E-14126183No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13126183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.535127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16127189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MELEAIVYSQ DPFTYGCKDS YSLAGGGAWG YDFDQLQEDD KAFLGILENN NMEQQGLHAS  60
WDSSSLSLMQ QEKEWDHNSS SPGTCNVDQS LQGILFPAIM EPAPVTTTNR RKRRRTKSSK  120
NKEEIESQRM THIAVERNRR KQMNEYLAVL RSLMPPSYVQ RGDQASIIGG AINFVKELEQ  180
LLQTMGTNKK NKQQPDDNGF PSRLFAEFFT FPQYSTRASQ PSVTADESVA DQNQRALGDI  240
EVTMVESHAN LKILSKKRPG QLLKLMVGLQ NLRLSILHLN VTTVDQMVLY SVSVKVEEGC  300
HLNTVDEIAA AVNHMLYRIE EATAFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G101900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302324.20.0transcription factor bHLH94
SwissprotQ9C7T41e-87BH096_ARATH; Transcription factor bHLH96
TrEMBLB9GV130.0B9GV13_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]