PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G105300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 220aa    MW: 24038.2 Da    PI: 9.3801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G105300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.8e-152572254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        +++h+e ErrRR+riN  +++Lr+llP++     +K +Ka+ L ++v+++++L
  Potri.002G105300.1 25 CKSHKETERRRRQRINAHLSTLRTLLPNP-----TKTDKASLLAQVVHHVRDL 72
                        789**************************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.42E-122273No hitNo description
SuperFamilySSF474596.28E-132377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.7392372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-122572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-132677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-92980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4118179No hitNo description
CDDcd048730.00467120185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMDGGESILS SASKTEAKIS TESSCKSHKE TERRRRQRIN AHLSTLRTLL PNPTKTDKAS  60
LLAQVVHHVR DLKMKAAGSA RQYSNNCSSG LEPEENWPYP GEVDEATLSC CGHEEKMIKV  120
SVCCEDRPGL HMDLTRAIKS VRARAVRAEM MTVAGRTKSV VVMRWDNGSG GEEDVGILKR  180
ALNAVVENRA SGSGFGQVVQ GNKRARVFGL VSDVDRDRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G105300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450842.11e-162transcription factor bHLH30
TrEMBLA0A2K2BGR81e-160A0A2K2BGR8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10540.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-31bHLH family protein