PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G105600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25159.8 Da    PI: 7.5072
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G105600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.2e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n + rqvtfskRr g++KKAeELSvLCdaevaviifs tgkl+eyss
  Potri.002G105600.1  9 KKIDNVTARQVTFSKRRRGLFKKAEELSVLCDAEVAVIIFSATGKLFEYSS 59
                        68***********************************************96 PP
2K-box53.97.6e-19871711599
               K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         +  + ++ +L ke+++  +++R++ GedL+ L+++eLqqLe++Le +l+++ ++K e ++++i++l +k  +l eenk+L++k++
  Potri.002G105600.1  87 QLENSNHMRLSKEVSEKSHQLRRMRGEDLHGLNIEELQQLEKALEVGLSRVLETKGERIMNEISTLERKGVQLLEENKQLKQKIA 171
                         556677889999999999*****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.039161IPR002100Transcription factor, MADS-box
CDDcd002653.34E-39275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-31375IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.60186176IPR002487Transcription factor, K-box
PfamPF014869.5E-1790170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAREKIKIKK IDNVTARQVT FSKRRRGLFK KAEELSVLCD AEVAVIIFSA TGKLFEYSSS  60
SMKDVLARYN LHSNNLDKIN PPSLELQLEN SNHMRLSKEV SEKSHQLRRM RGEDLHGLNI  120
EELQQLEKAL EVGLSRVLET KGERIMNEIS TLERKGVQLL EENKQLKQKI ATIYKGKGPA  180
LVDLDTAVQE EGMSSESTTN VCSCSSGPPV EDDSSDTSLK LGLAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20169169MEF2C
5f28_B1e-20169169MEF2C
5f28_C1e-20169169MEF2C
5f28_D1e-20169169MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G105600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5013920.0AY501392.1 Populus tomentosa MADS box transcription factor (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452024.11e-163MADS-box protein JOINTLESS
SwissprotQ9FUY61e-101JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K2BGT01e-162A0A2K2BGT0_POPTR; Uncharacterized protein
STRINGEOY154441e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Representative plantOGRP60761120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]