PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G110800.1
Common NamePOPTR_0002s11140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 361aa    MW: 39278.4 Da    PI: 4.6148
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G110800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15213249135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Potri.002G110800.1 213 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 249
                         *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.76673108IPR010399Tify domain
SMARTSM009796.7E-773108IPR010399Tify domain
PfamPF062003.6E-1076107IPR010399Tify domain
PfamPF062031.2E-14141182IPR010402CCT domain
PROSITE profilePS5101712.679141183IPR010402CCT domain
SMARTSM004013.0E-10207265IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-11208256No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14211254IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.25E-15212256No hitNo description
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13213249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYKDHRTR APIQIEDDDD GEYEDGDGMD DMEEEAAVAQ VNSGVSVAEH  60
NHGAGGGGGG VVIASRTSEL TLSFEGEVYV FPAVTPEKVQ AVLLLLGGRD IPTAVPTIEV  120
QYDQNNRGVG DTPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF  180
ASIKENPGDS SWDSGQSCLQ DGTPLSETVV RRCKHCGVSE NNTPAMRRGP AGPRTLCNAC  240
GLMWANKGTL RDLSKGGRNL PVDQIEPETL IEVKPSIIEG EFSGNQDEHG TAKDLSKAVS  300
EGFNNHSINP DEVFQEATED ITNTLPMGVI HSSGDDDEQE PLVELANPSD TELDIPANFD  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135DTPKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G110800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302363.20.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL76e-71GAT24_ARATH; GATA transcription factor 24
TrEMBLB9GN850.0B9GN85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-75ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]