PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G110800.3
Common NamePOPTR_0002s11140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 252aa    MW: 27480.8 Da    PI: 7.3934
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G110800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA473.6e-15213246132
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                         C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ 
  Potri.002G110800.3 213 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWAN 246
                         *******99***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.7E-773108IPR010399Tify domain
PROSITE profilePS5132012.76673108IPR010399Tify domain
PfamPF062002.2E-1076107IPR010399Tify domain
PfamPF062036.8E-15141182IPR010402CCT domain
PROSITE profilePS5101712.679141183IPR010402CCT domain
SMARTSM004013.9E-4207250IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-9208247No hitNo description
Gene3DG3DSA:3.30.50.101.3E-11211247IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.92E-11212247No hitNo description
PfamPF003205.9E-13213247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYKDHRTR APIQIEDDDD GEYEDGDGMD DMEEEAAVAQ VNSGVSVAEH  60
NHGAGGGGGG VVIASRTSEL TLSFEGEVYV FPAVTPEKVQ AVLLLLGGRD IPTAVPTIEV  120
QYDQNNRGVG DTPKRSNLSR RIASLVRFRE KRKERCFDKK IRYTVRKEVA QRMHRKNGQF  180
ASIKENPGDS SWDSGQSCLQ DGTPLSETVV RRCKHCGVSE NNTPAMRRGP AGPRTLCNAC  240
GLMWANKVCL L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130135DTPKRS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G110800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302363.20.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL72e-66GAT24_ARATH; GATA transcription factor 24
TrEMBLB9GN850.0B9GN85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11140.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-70ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]