PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G113300.2
Common NameKNOX, POPTR_0002s11400g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 369aa    MW: 42558.6 Da    PI: 6.5175
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G113300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-092953302055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Potri.002G113300.2 295 YKWPYPSETEKVALAETTGLDQKQINNWFINQRKRH 330
                         5679*****************************885 PP
2ELK38.13.2e-13250271122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyLgsLkqE+s
  Potri.002G113300.2 250 ELKNHLLRKYSGYLGSLKQELS 271
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-19106150IPR005540KNOX1
PfamPF037901.0E-20107149IPR005540KNOX1
SMARTSM012561.5E-29157208IPR005541KNOX2
PfamPF037911.9E-24162207IPR005541KNOX2
PROSITE profilePS5121311.243250270IPR005539ELK domain
SMARTSM011883.0E-7250271IPR005539ELK domain
PfamPF037892.2E-10250271IPR005539ELK domain
PROSITE profilePS5007112.973270333IPR001356Homeobox domain
SuperFamilySSF466897.7E-20271345IPR009057Homeodomain-like
SMARTSM003891.7E-12272337IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-27275336IPR009057Homeodomain-like
CDDcd000864.67E-11282334No hitNo description
PfamPF059201.2E-16290329IPR008422Homeobox KN domain
PROSITE patternPS000270308331IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEDYNQMSEN TTPRGNFLYA SQLLAPNSSP YGRTSSGSTV SNQQTQMPLN PFHLQSNDQC  60
FQSDTHPIVK TEASTSHAQK FHYPLLRGYQ TINQQQQGSE SSSEVEAIKA KIIAHPQYSN  120
LMEAYMDCQK VRAPPEVVAR LAAARQEFES RQRSFITSRD NSKDPELDQF MEAYYDMLVK  180
YREELTRPIQ EAMDFMRRIE TQLNMICHGP LRIFNSDDKS EGVGSSEDDQ DNSGGETELP  240
EIDPRAEDRE LKNHLLRKYS GYLGSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP  300
SETEKVALAE TTGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG  360
DGHYRLGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.2100.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G113300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8074820.0FJ807482.1 Populus trichocarpa KNOX transcription factor (KNOX) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301134.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB9GNK10.0B9GNK1_POPTR; KNOX transcription factor
STRINGEOY156240.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-147KNOTTED-like from Arabidopsis thaliana