PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G114700.2
Common NamePOPTR_0002s11540g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 399aa    MW: 43402.2 Da    PI: 5.6432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G114700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-10241289355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Potri.002G114700.2 241 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.31E-11236293No hitNo description
SuperFamilySSF474593.14E-17236306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17239306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7241289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDGSGDSNDD LGYQNRGESV MNCPSSGMNT NPFYVSAWDP VVSLSQPGNF GGSSIVSQSG  60
FSNSPFPIVM ENPGISNLVH YPSGSGFVEL VPKFPGFGSG NFSEMVGSLG LTECGQITHT  120
GCPPNYNKEA NNAQHQEDQQ LSEETSIGAS PNGKRRKRVP ESNSPLDPNK NTEGELRKDL  180
SGESCDIAKE LDEKTQKTEQ NPGPNLRGKQ AAKQAKDDTQ SGEVPKENYF HVRARRGQAT  240
NSHSLAERVR REKISERMRM LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA  300
TVNPELQIDV ERILSKDILH SRGGNAAILG FSPGISSHPY SHRIFQPGIQ VIPNSNPQFS  360
PAPHAVLDNE LQSYFQMGFD SSSAIDNLGP NARLKPEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G114700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451922.10.0transcription factor bHLH74 isoform X2
TrEMBLA0A2K2BHD90.0A0A2K2BHD9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11540.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-92bHLH family protein