PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G115900.1
Common NamePOPTR_0002s11660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 148aa    MW: 17050.4 Da    PI: 10.8003
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G115900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-1055106556
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                         +r rr+ +NRe+ArrsR RKk  +e L++    L+  N++Lk++l ++ +++
  Potri.002G115900.1  55 RRRRRMLSNRESARRSRWRKKRHLEDLTQQLNRLKIVNRELKNRLGSILNQS 106
                         789****************************************999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1051115IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-853105No hitNo description
PROSITE profilePS5021710.41553116IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-1055107No hitNo description
PfamPF001708.7E-955108IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605873IPR004827Basic-leucine zipper domain
CDDcd147021.34E-1260107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSFAQEAVQF ECPVQGPGFT DNEIQELLSL LRSPSPGQNS GSSGSNQALY SLDERRRRRM  60
LSNRESARRS RWRKKRHLED LTQQLNRLKI VNRELKNRLG SILNQSHVLW RENDRLMLES  120
IALKSRLSDL CYVFAAMQKS QQQCSSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15675RRRMLSNRESARRSRWRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G115900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999906.18e-77PREDICTED: basic leucine zipper 43
TrEMBLA0A2K2BHF71e-101A0A2K2BHF7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11660.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59963052
Representative plantOGRP1173246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.12e-11basic leucine-zipper 4