PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G119400.1
Common NamePOPTR_0002s12020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 209aa    MW: 22516.6 Da    PI: 8.1518
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G119400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.46.2e-302103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+ ++     p++q +++ +++k+FG+s +++l++a+pe +r+++++sl++eA+ r+ +Pv+G+vg++++++++
  Potri.002G119400.1   2 SCNGCRVLRKGCSETCVLRSCLhwitnPEAQGNATLFLAKFFGRSDLMSLISAVPEAQRPALFQSLLFEACGRTVNPVNGVVGLLWSGNWH 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l 
  Potri.002G119400.1  93 MCQEAVETVLS 103
                         *****998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.9461107IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SCLHWITNPE AQGNATLFLA KFFGRSDLMS LISAVPEAQR  60
PALFQSLLFE ACGRTVNPVN GVVGLLWSGN WHMCQEAVET VLSGGALQPL PGILTGVLAP  120
NCDESSDRFS AAAYAVHNMA RNQSRSFAKE NNNEVVSDHR VNLCLARGKG GRDKRGRDAV  180
SFYTGGESET ISFESSGGDK KRLLNLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G119400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301153.31e-153LOB domain-containing protein 39
SwissprotQ9SN232e-63LBD38_ARATH; LOB domain-containing protein 38
SwissprotQ9SZE82e-63LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2K2BHK81e-152A0A2K2BHK8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12020.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-65LOB domain-containing protein 39