PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G124400.1
Common NamePOPTR_0002s12600g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 308aa    MW: 32466.1 Da    PI: 4.6213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G124400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.2e-061501703555
                         TS-STCHHHHHHHHHHHHHHH CS
                 HLH  35 skKlsKaeiLekAveYIksLq 55 
                         s+K +Ka++L +A+eY+k+Lq
  Potri.002G124400.1 150 SEKTDKASMLDEAIEYLKQLQ 170
                         89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-7146180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7148180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-5150174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MADLYGPARS PTTEPEEIST FLQQFLGNNS SSSSSKFIHH ALSTPVETGS AAVEFLDCHL  60
FGRSGTECGA GAGNSGVNLS DPGGYYVKGV VDNAVSSGIS KRRGASVEDD LGDFSCDSEK  120
GAEVAEVQAN AVRPRSSSKR SRAAEVHNLS EKTDKASMLD EAIEYLKQLQ LQVQMLTMRN  180
GLSLHPMCLP GALQPMQPPL SGMSFDEGNG LLTTDTLTGI FSANEESSVQ TALNLPSQCT  240
VSNQPIAIPS GTNITSSETS FGFEPLIHVN HAPFNLCTSS KEICREATPQ AQIEMNQTVK  300
TSPSGVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G124400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450412.10.0transcription factor SPATULA isoform X1
TrEMBLB9GNU60.0B9GNU6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-25bHLH family protein