PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G128900.1
Common NamePOPTR_0002s13030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 238aa    MW: 26308.4 Da    PI: 7.41
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G128900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-173782147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W+ eEd +l  +v+++G+++W++I+r++  gR++k+c++rw + 
  Potri.002G128900.1 37 KGPWSSEEDMILTGLVERHGPKNWSLISRYIK-GRSGKSCRLRWCNQ 82
                        79*****************************9.***********985 PP
2Myb_DNA-binding53.36.4e-1791133347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Potri.002G128900.1  91 PFSPAEDEAILVAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133
                         79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6873283IPR017930Myb domain
SuperFamilySSF466897.19E-3135130IPR009057Homeodomain-like
SMARTSM007173.6E-143685IPR001005SANT/Myb domain
PfamPF002492.4E-163782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-233890IPR009057Homeodomain-like
CDDcd001671.46E-133981No hitNo description
PROSITE profilePS5129423.67584138IPR017930Myb domain
SMARTSM007177.1E-1588136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2291137IPR009057Homeodomain-like
PfamPF002493.5E-1491133IPR001005SANT/Myb domain
CDDcd001674.97E-1291134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
METMNMCSTS SSDSSASESS FNDNKTPRST DKSARIKGPW SSEEDMILTG LVERHGPKNW  60
SLISRYIKGR SGKSCRLRWC NQLSPNVEHR PFSPAEDEAI LVAHARYGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRARQ RQSQMNLEGN FDSNYGNNYE CIDINMTPGS MADGMVREEE  180
DALTALTLAP PGIGGAVCGS NGGMVVERTA ESLPAGFWDV MRDVIAREVR EYVSSTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-40361383105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-403613857159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-403613857159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-40361383105C-Myb DNA-Binding Domain
1msf_C2e-40361383105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139LKRRARQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G128900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301201.11e-177transcription factor MYB73
SwissprotO231609e-55MYB73_ARATH; Transcription factor MYB73
TrEMBLB9GNY71e-176B9GNY7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13030.11e-177(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.19e-57myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]