PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G143300.1
Common NamePOPTR_0002s14430g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 485aa    MW: 52715.6 Da    PI: 8.6153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G143300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16297343455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Potri.002G143300.1 297 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 343
                         6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-19290360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13297343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-18297352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-17298347No hitNo description
SMARTSM003532.2E-18299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MSHQCVPSWE LDDNPTTAPK VSLRSHSNSG APYMPMLNYE VAELTWENGQ LAMHGLGQPR  60
VPAKPIASTS PSKYTWDKPR ASGTLESIVN LATCIPQCNK QTFDNSGSDH DFVPWFNHHR  120
ASASATMTMD ALVPCSKRSD QERTTRVIDS SPAGLGTDCV VGCSTRVGSC SAPTATQNEV  180
GLLTRKREKV ARVPVPAEWS RDQSVNRGAT FSKKDSQQVT VDSCERELGV GFTSTTSFGS  240
QENTSSGTKP CTKTNTADEN DSVCHSRPQR EAGDEDDKKK GNGKSSVSNR RSRAAAVHNQ  300
SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVQMVS RMNMQPMMLP  360
MALQQQLQMS MMAPISMGMA GMGMGMGMGM GMGVVDMNTL AARSNITGVS PVLHPTAFMP  420
MTTWDGSNSH ERLPTAAPSA TVMPDPLSAF LACQSQPMTM DAYSRMASMY QQLHQQSPAS  480
NSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306ERKRRD
2302307RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G143300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386561.10.0transcription factor UNE10
SwissprotQ8GZ381e-102UNE10_ARATH; Transcription factor UNE10
TrEMBLU5GLG20.0U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]