PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G144200.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 739aa    MW: 81244.9 Da    PI: 5.4128
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G144200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.55.6e-973817364373
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + e+Ae +++g+  laq +Larl+++ + p g+p qR a+yf+eAL+  l+       +  + s  + +n + ++ a+k fse+sPil+f
  Potri.002G144200.1 381 PICEAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------N-NNNSIGTAYNPIFKIGAYKSFSEISPILQF 464
                         5789*********************9989999*******************98......3.33444445789******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         +++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+   + el  t+e+L+ fA+e+++pfe ++l 
  Potri.002G144200.1 465 ANFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFVSPSSHdeLELELGFTQENLRIFASEINMPFELEILS 555
                         **********************************************************99555667779*********************9 PP

                GRAS 183 akrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          ++l ++ ++ +L +  +E++aVnl l +++ +      +s+ + vL++vk+lsPkvvv  ++ +d+++ +F++++ +a++ y++l++sl+
  Potri.002G144200.1 556 LESLGSVsRPMTLCTLDKEVIAVNLPLGVFSNY------PSTLPVVLRFVKQLSPKVVVSLDSGCDRSDLPFAHHINHAIQSYTSLLESLD 640
                         89888884677788888**********998887......444556*********************************************6 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a    + +  +k+Er+l+++ i+ +v  ++        +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+
  Potri.002G144200.1 641 AV-NVNLDILQKIERFLVQPCIERMVLGRHGC----SDRTTPWRSLFLQSGFTPLTFSNFTESQAECLVQRTPVKGFHVEKKQSSLVLCWQ 726
                         65.34669999***************998887....677789************************************************* PP

                GRAS 364 drpLvsvSaW 373
                         +r LvsvSaW
  Potri.002G144200.1 727 QRDLVSVSAW 736
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.945352717IPR005202Transcription factor GRAS
PfamPF035141.9E-94381736IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MKAMPLPFEN FQGKGLPDFS SSSTTSSPDP FHQHHHKWQN NDSKESCGFL VGSTEPTSVL  60
DTISRQSPPT SSSTLSSSQG GGGGGGGAST ETTNDVAAAC GSSPSVDEKC GPQLGMEDWE  120
SVLSGSPSQE QSIIRLIMGD IEDPALGLNK LLQSGSRSQD TELNASGFGV VDQVFGFEVP  180
NMCTASANLV VNNNNIDPSS IHGTFLDSPL VNHEVTRIFS IGCVLHQNPT PNPVLFTSGI  240
SLLPGLFQQH QQQQASFDQD EKPQILNPGA ITNQNQHQFV QNPAMLLPLS YAQLEEHHNN  300
LHFLSPPPLK RLNSGHVGAN YMPKVFDLRP PELFLPLQQQ QQQNHQFQMM QQQRQGMITK  360
QKIAIDELAN QQQLQHAIIN PICEAAELIE TGNPVLAQGI LARLNHQLSV PIGKPYQRTA  420
FYFKEALQLL LNMNNNNSIG TAYNPIFKIG AYKSFSEISP ILQFANFTCN QALLEAFEGF  480
ERIHVVDFDI GYGGQWASLM QELALRNGGA PSLKITAFVS PSSHDELELE LGFTQENLRI  540
FASEINMPFE LEILSLESLG SVSRPMTLCT LDKEVIAVNL PLGVFSNYPS TLPVVLRFVK  600
QLSPKVVVSL DSGCDRSDLP FAHHINHAIQ SYTSLLESLD AVNVNLDILQ KIERFLVQPC  660
IERMVLGRHG CSDRTTPWRS LFLQSGFTPL TFSNFTESQA ECLVQRTPVK GFHVEKKQSS  720
LVLCWQQRDL VSVSAWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3539373618374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G144200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451543.10.0scarecrow-like protein 6 isoform X1
SwissprotO813161e-146SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K2BIS90.0A0A2K2BIS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-136GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]