PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G144200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 703aa    MW: 77311.4 Da    PI: 5.317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G144200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.75e-973457004373
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + e+Ae +++g+  laq +Larl+++ + p g+p qR a+yf+eAL+  l+       +  + s  + +n + ++ a+k fse+sPil+f
  Potri.002G144200.2 345 PICEAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------N-NNNSIGTAYNPIFKIGAYKSFSEISPILQF 428
                         5789*********************9989999*******************98......3.33444445789******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         +++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+   + el  t+e+L+ fA+e+++pfe ++l 
  Potri.002G144200.2 429 ANFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFVSPSSHdeLELELGFTQENLRIFASEINMPFELEILS 519
                         **********************************************************99555667779*********************9 PP

                GRAS 183 akrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          ++l ++ ++ +L +  +E++aVnl l +++ +      +s+ + vL++vk+lsPkvvv  ++ +d+++ +F++++ +a++ y++l++sl+
  Potri.002G144200.2 520 LESLGSVsRPMTLCTLDKEVIAVNLPLGVFSNY------PSTLPVVLRFVKQLSPKVVVSLDSGCDRSDLPFAHHINHAIQSYTSLLESLD 604
                         89888884677788888**********998887......444556*********************************************6 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a    + +  +k+Er+l+++ i+ +v  ++        +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+
  Potri.002G144200.2 605 AV-NVNLDILQKIERFLVQPCIERMVLGRHGC----SDRTTPWRSLFLQSGFTPLTFSNFTESQAECLVQRTPVKGFHVEKKQSSLVLCWQ 690
                         65.34669999***************998887....677789************************************************* PP

                GRAS 364 drpLvsvSaW 373
                         +r LvsvSaW
  Potri.002G144200.2 691 QRDLVSVSAW 700
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.945316681IPR005202Transcription factor GRAS
PfamPF035141.7E-94345700IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MKAMPLPFEN FQGKGLPDFS SSSTTSSPDP FHQHHHKWQN NDSKESCGFL VGSTEPTSVL  60
DTISRQSPPT SSSTLSSSQG GGGGGGGAST ETTNDVAAAC GSSPSVDEKC GPQLGMEDWE  120
SVLSGSPSQE QSIIRLIMGD IEDPALGLNK LLQSGSRSQD TELNASGFGV VDQVFGFEVP  180
NMCTASANLV VNNNNIDPSS IHGISLLPGL FQQHQQQQAS FDQDEKPQIL NPGAITNQNQ  240
HQFVQNPAML LPLSYAQLEE HHNNLHFLSP PPLKRLNSGH VGANYMPKVF DLRPPELFLP  300
LQQQQQQNHQ FQMMQQQRQG MITKQKIAID ELANQQQLQH AIINPICEAA ELIETGNPVL  360
AQGILARLNH QLSVPIGKPY QRTAFYFKEA LQLLLNMNNN NSIGTAYNPI FKIGAYKSFS  420
EISPILQFAN FTCNQALLEA FEGFERIHVV DFDIGYGGQW ASLMQELALR NGGAPSLKIT  480
AFVSPSSHDE LELELGFTQE NLRIFASEIN MPFELEILSL ESLGSVSRPM TLCTLDKEVI  540
AVNLPLGVFS NYPSTLPVVL RFVKQLSPKV VVSLDSGCDR SDLPFAHHIN HAIQSYTSLL  600
ESLDAVNVNL DILQKIERFL VQPCIERMVL GRHGCSDRTT PWRSLFLQSG FTPLTFSNFT  660
ESQAECLVQR TPVKGFHVEK KQSSLVLCWQ QRDLVSVSAW SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3535770018374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.177240.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G144200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451543.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A2K2BIS90.0A0A2K2BIS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-155GRAS family protein