PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G144200.3
Common NamePOPTR_0002s14500g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 606aa    MW: 66305 Da    PI: 5.2005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G144200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.33.3e-972486034373
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + e+Ae +++g+  laq +Larl+++ + p g+p qR a+yf+eAL+  l+       +  + s  + +n + ++ a+k fse+sPil+f
  Potri.002G144200.3 248 PICEAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------N-NNNSIGTAYNPIFKIGAYKSFSEISPILQF 331
                         5789*********************9989999*******************98......3.33444445789******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         +++t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+   + el  t+e+L+ fA+e+++pfe ++l 
  Potri.002G144200.3 332 ANFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFVSPSSHdeLELELGFTQENLRIFASEINMPFELEILS 422
                         **********************************************************99555667779*********************9 PP

                GRAS 183 akrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          ++l ++ ++ +L +  +E++aVnl l +++ +      +s+ + vL++vk+lsPkvvv  ++ +d+++ +F++++ +a++ y++l++sl+
  Potri.002G144200.3 423 LESLGSVsRPMTLCTLDKEVIAVNLPLGVFSNY------PSTLPVVLRFVKQLSPKVVVSLDSGCDRSDLPFAHHINHAIQSYTSLLESLD 507
                         89888884677788888**********998887......444556*********************************************6 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a    + +  +k+Er+l+++ i+ +v  ++        +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+
  Potri.002G144200.3 508 AV-NVNLDILQKIERFLVQPCIERMVLGRHGC----SDRTTPWRSLFLQSGFTPLTFSNFTESQAECLVQRTPVKGFHVEKKQSSLVLCWQ 593
                         65.34669999***************998887....677789************************************************* PP

                GRAS 364 drpLvsvSaW 373
                         +r LvsvSaW
  Potri.002G144200.3 594 QRDLVSVSAW 603
                         ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.756219584IPR005202Transcription factor GRAS
PfamPF035141.2E-94248603IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MKAMPLPFEN FQGKGLPDFS SSSTTSSPDP FHQHHHKWQN NDSKESCGFL VGSTEPTSVL  60
DTISRQSPPT SSSTLSSSQG GGGGGGGAST ETTNDVAAAC GSSPSVDEKC GPQLGMEDWE  120
SVLSGSPSQE QSIIRLIMGD IEDPALGLNK LLQSGSRSQD TELNASGFGV VDQVFGFEVP  180
NMYEKPQILN PGAITNQNQH QFVQNPAMLL PLSYAQLEEH HNNLHFLSPP PLKRLNSGHQ  240
LQHAIINPIC EAAELIETGN PVLAQGILAR LNHQLSVPIG KPYQRTAFYF KEALQLLLNM  300
NNNNSIGTAY NPIFKIGAYK SFSEISPILQ FANFTCNQAL LEAFEGFERI HVVDFDIGYG  360
GQWASLMQEL ALRNGGAPSL KITAFVSPSS HDELELELGF TQENLRIFAS EINMPFELEI  420
LSLESLGSVS RPMTLCTLDK EVIAVNLPLG VFSNYPSTLP VVLRFVKQLS PKVVVSLDSG  480
CDRSDLPFAH HINHAIQSYT SLLESLDAVN VNLDILQKIE RFLVQPCIER MVLGRHGCSD  540
RTTPWRSLFL QSGFTPLTFS NFTESQAECL VQRTPVKGFH VEKKQSSLVL CWQQRDLVSV  600
SAWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3526060318374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.177240.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G144200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451543.10.0scarecrow-like protein 6 isoform X1
SwissprotO813161e-179SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2K2BIS90.0A0A2K2BIS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14500.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-169GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]