PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G144700.1
Common NamePOPTR_0002s14550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 697aa    MW: 76538.5 Da    PI: 6.2269
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G144700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.22.5e-993416954374
                GRAS   4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          + ++Ae +++g+  laq +Larl+++ + p g+p qR a+yf+eAL+  l+       +  + s  +  n + ++ a+k fse+sPil+f
  Potri.002G144700.1 341 PICQAAELIETGNPVLAQGILARLNHQlSVPIGKPYQRTAFYFKEALQLLLNM------NN-NNSIGTACNLIFKIGAYKSFSEISPILQF 424
                         5789*********************9989999*******************98......33.3333344689******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         + +t+Nqa+lea+eg er+H++Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+s+++ el  t+e+L+ fA+e+++pfe+++l  +
  Potri.002G144700.1 425 ASFTCNQALLEAFEGFERIHVVDFDIGYGGQWASLMQELALRNGGAPSLKITAFASPSSHDELELGFTQENLKMFASEINMPFEIEILSLE 515
                         ****************************************************************************************777 PP

                GRAS 185 rledle.leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +l++ + +  Lr+ ++E++aVnl +  ++ +      +s+ + vL++vk+l Pkvvv  ++ +d+++ +F++++ +a++ y++l++sl+a 
  Potri.002G144700.1 516 SLSSGSwPMPLRLTEKEVIAVNLPVGSFSNY------PSTLPLVLRFVKQLLPKVVVSLDRGCDRSDLPFAHHVNHAIQSYTSLLESLDAV 600
                         7777642778***************888877......445567*********************************************665 PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                            + ++ +k+Er+l+++ i++ v  +++       +   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++
  Potri.002G144700.1 601 -NVNLDAVQKIERFLVQPGIEKTVLGRHSC----PDRTPPWRSLFLQSGFTPLTFSNFTESQAEYLVQRTPVRGFHVEKRQSSLVLCWQHK 686
                         .4566999*****************99998....89999**************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          Lvs+SaWr
  Potri.002G144700.1 687 DLVSASAWR 695
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.08312675IPR005202Transcription factor GRAS
PfamPF035148.8E-97341695IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MKAMPLPFED FQAKGLLGFS SYSSSSPDPF HQHHHKWQNN NSKESCGFLV GSTEPTSVLD  60
TISRQSPPTS SSTLSSSQGG GGGGGGASTD TTNGAAGAGG SSPSVDEKCG PQLGMEDWES  120
VLSGSPIQEQ SILRLIMGDI EDPSLGLYKL LQSGSRSQDM ELNASGFGVV DQVFGFEVPN  180
MSTASANLAV NHNNFDPSSI HGINLLPGLF QQHHQQAAFD QDEKPQILNP GAMINQNQHQ  240
FVQNPAMLLP LSYAQLEEHH NNLHSLSPPP LKRLNTGPVG ANHVPKVFDL RPPELFLPRQ  300
QQQNHQFQMT QHQRQGMITK QKIASDELAN QQQLQQAIIN PICQAAELIE TGNPVLAQGI  360
LARLNHQLSV PIGKPYQRTA FYFKEALQLL LNMNNNNSIG TACNLIFKIG AYKSFSEISP  420
ILQFASFTCN QALLEAFEGF ERIHVVDFDI GYGGQWASLM QELALRNGGA PSLKITAFAS  480
PSSHDELELG FTQENLKMFA SEINMPFEIE ILSLESLSSG SWPMPLRLTE KEVIAVNLPV  540
GSFSNYPSTL PLVLRFVKQL LPKVVVSLDR GCDRSDLPFA HHVNHAIQSY TSLLESLDAV  600
NVNLDAVQKI ERFLVQPGIE KTVLGRHSCP DRTPPWRSLF LQSGFTPLTF SNFTESQAEY  660
LVQRTPVRGF HVEKRQSSLV LCWQHKDLVS ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3034469425378Protein SCARECROW
5b3h_A6e-3034469424377Protein SCARECROW
5b3h_D6e-3034469424377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G144700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2118040.0AC211804.1 Populus trichocarpa clone POP017-B20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451815.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A2K2BIU30.0A0A2K2BIU3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-164GRAS family protein