PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G153500.1
Common NamePOPTR_0002s15480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 231aa    MW: 25386.1 Da    PI: 10.0758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G153500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-182877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d s   +r r +lg+++++e Aa+a+++a+++l+g
  Potri.002G153500.1 28 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDSPEAAARAYDEAARALRG 77
                        589******.7*********43...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-342891IPR001471AP2/ERF domain
PfamPF008478.6E-142877IPR001471AP2/ERF domain
CDDcd000182.49E-172885No hitNo description
Gene3DG3DSA:3.30.730.103.8E-272886IPR001471AP2/ERF domain
PROSITE profilePS5103220.2712885IPR001471AP2/ERF domain
PRINTSPR003672.4E-62940IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-192985IPR016177DNA-binding domain
PRINTSPR003672.4E-65167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAEPETLKNP TTATTNKAQA TKGPTARRFV GVRQRPSGRW VAEIKDSSQR VRLWLGTYDS  60
PEAAARAYDE AARALRGGNA RTNFASVNPS LNQSGSSPSN GGFNMPESDG RHSLSFSSLK  120
ARLSKNLQSI MARTTENKST KNRVSDHFTF ANIFHCRSYQ YQNPVDTKNI QKVVQPSIIV  180
PRVSGHEPSY SWETSSVSDC SNGWIGFRQH GLDSDGSDIG EVITVNADQM M
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G153500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
GenBankAC1834260.0AC183426.2 Populus trichocarpa clone Pop1-45L17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386587.21e-172ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2K2BJ741e-172A0A2K2BJ74_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0014s07280.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-19related to AP2 11