PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G159400.2
Common NamePOPTR_0002s16080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 650aa    MW: 73059.5 Da    PI: 5.1068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G159400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-064604961455
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +r+N++f  Lr+++P+ +        +K +iL  +++Y+k+L+
  Potri.002G159400.2 460 QRVNDKFIVLRSMVPSiS------EIDKESILSDTINYLKQLE 496
                         689*************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.7E-5015190IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.506446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-5455501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9460515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-8460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-4460500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAHVVQSQQA ILEKLRKQLA IAVRSVQWSY AIFWSLSTRQ KGVLEWGGGY YNGDIKTRKV  60
QATELKADKI GLQRSEQLRE LYKSLLGGDA GQQAKRSSPA LSPEDLSDEE WYYLVCMSFV  120
FNPGEGLPGR ALANKQTIWL CNAQYADSKV FSRSLLAKTV VCFPYLEGVM ELGVTELVTE  180
DPSLIQHIKA SLLDFSKPDC SEKSSSAAHN GDDDEDPMST KISHEIVDSL VLENLYTPTD  240
DIELEQEGIN DLHGNLREEF KRNSPDDCSD GCEHNHQTED SMHEGLNGGV SQVQSWHFMD  300
DEFSDDVLDS MNSSECISEA VVKQGKAVLS SKEKNVTRLQ SQVFQEGNHT KLSSFDLGAD  360
DDLHYRRTVC VIMKSSSQSI ENPCFRSGDH KSSFFSWKKR AVDGVMPRVQ QNMLKKILFA  420
VPLIYGGHSL RFDKENGGTD CLKKLEGCET CKEHYKSDKQ RVNDKFIVLR SMVPSISEID  480
KESILSDTIN YLKQLESRVA ELESCKGWID HEAGHRRSYM DMVDQTSDND DIKKIDNGKR  540
SWVNKRKALD IDEAELELDG VSPKDGMPLD LKVCTKEKEV LIEIRCPYRE YMLLDIMDEI  600
NKLQLDVHSV QSSTLDGIFA LTLKSKFRGA AVAPAGMIEQ ALWKIAGKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A3e-151618851227Transcription factor MYC3
4ywc_A3e-151618851227Transcription factor MYC3
4ywc_B3e-151618851227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G159400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301357.10.0transcription factor EGL1 isoform X2
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-160bHLH family protein