PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G159400.3
Common NamePOPTR_0002s16080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 652aa    MW: 73453.8 Da    PI: 4.96
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G159400.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-064655011455
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +r+N++f  Lr+++P+ +        +K +iL  +++Y+k+L+
  Potri.002G159400.3 465 QRVNDKFIVLRSMVPSiS------EIDKESILSDTINYLKQLE 501
                         689*************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5415195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.506451500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-5460506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-8465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-9465520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-4465505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MAHVVQSQQA ILEKLRKQLA IAVRSVQWSY AIFWSLSTRQ KGVLEWGGGY YNGDIKTRKV  60
QATELKADKI GLQRSEQLRE LYKSLLGGDA GQQAKRSSPA LSPEDLSDEE WYYLVCMSFV  120
FNPGEGLPGR ALANKQTIWL CNAQYADSKV FSRSLLAKSA SIQTVVCFPY LEGVMELGVT  180
ELVTEDPSLI QHIKASLLDF SKPDCSEKSS SAAHNGDDDE DPMSTKISHE IVDSLVLENL  240
YTPTDDIELE QEGINDLHGN LREEFKRNSP DDCSDGCEHN HQTEDSMHEG LNGGVSQVQS  300
WHFMDDEFSD DVLDSMNSSE CISEAVVKQG KAVLSSKEKN VTRLQSQVFQ EGNHTKLSSF  360
DLGADDDLHY RRTVCVIMKS SSQSIENPCF RSGDHKSSFF SWKKRAVDGV MPRVQQNMLK  420
KILFAVPLIY GGHSLRFDKE NGGTDCLKKL EGCETCKEHY KSDKQRVNDK FIVLRSMVPS  480
ISEIDKESIL SDTINYLKQL ESRVAELESC KGWIDHEAGH RRSYMDMVDQ TSDNDDIKKI  540
DNGKRSWVNK RKALDIDEAE LELDGVSPKD GMPLDLKVCT KEKEVLIEIR CPYREYMLLD  600
IMDEINKLQL DVHSVQSSTL DGIFALTLKS KVCAEDQSSC YLSAYLVFQM H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-161619351227Transcription factor MYC3
4ywc_A2e-161619351227Transcription factor MYC3
4ywc_B2e-161619351227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G159400.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301357.10.0transcription factor EGL1 isoform X2
RefseqXP_024451925.10.0transcription factor EGL1 isoform X1
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-157bHLH family protein