PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G159400.4
Common NamePOPTR_0002s16080g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 481aa    MW: 54093.8 Da    PI: 4.7516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G159400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.63.5e-062913271455
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +r+N++f  Lr+++P+ +        +K +iL  +++Y+k+L+
  Potri.002G159400.4 291 QRVNDKFIVLRSMVPSiS------EIDKESILSDTINYLKQLE 327
                         689*************66......8****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.506277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-5286332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-9291347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-8291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-4291331No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MELGVTELVT EDPSLIQHIK ASLLDFSKPD CSEKSSSAAH NGDDDEDPMS TKISHEIVDS  60
LVLENLYTPT DDIELEQEGI NDLHGNLREE FKRNSPDDCS DGCEHNHQTE DSMHEGLNGG  120
VSQVQSWHFM DDEFSDDVLD SMNSSECISE AVVKQGKAVL SSKEKNVTRL QSQVFQEGNH  180
TKLSSFDLGA DDDLHYRRTV CVIMKSSSQS IENPCFRSGD HKSSFFSWKK RAVDGVMPRV  240
QQNMLKKILF AVPLIYGGHS LRFDKENGGT DCLKKLEGCE TCKEHYKSDK QRVNDKFIVL  300
RSMVPSISEI DKESILSDTI NYLKQLESRV AELESCKGWI DHEAGHRRSY MDMVDQTSDN  360
DDIKKIDNGK RSWVNKRKAL DIDEAELELD GVSPKDGMPL DLKVCTKEKE VLIEIRCPYR  420
EYMLLDIMDE INKLQLDVHS VQSSTLDGIF ALTLKSKFRG AAVAPAGMIE QALWKIAGKT  480
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G159400.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301357.10.0transcription factor EGL1 isoform X2
TrEMBLB9GQ940.0B9GQ94_POPTR; BHLH family protein
STRINGPOPTR_0002s16080.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.13e-76bHLH family protein