PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G164900.1

Common Name

POPTR_0002s16640g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 194aa MW: 21894 Da PI: 9.3052

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G164900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2e-32	114	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg H+h+ Potri.002G164900.1 114 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHDHP 172 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-33	100	172	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-28	107	173	IPR003657	WRKY domain
PROSITE profile	PS50811	28.667	109	174	IPR003657	WRKY domain
SMART	SM00774	1.5E-37	114	173	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	115	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEGHEAPPPP PQLPQLAPSP NPSYLLTPLL LPSSSLQYPS IIEPQVLPDI DWVGLLSGQS 60 QLGEKRPVME SASMVAENGA EEERGNKDEK KGGRMKKATR PRFAFQTRSA DDILDDGYRW 120 RKYGQKAVKN SKYPRSYYRC THHTCNVKKQ VQRLSKDTSI VVTTYEGVHD HPCEKLMETL 180 TPLLKQMQFL ARF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-25	102	171	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G164900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377439	0.0	GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301377.2	1e-143	probable WRKY transcription factor 43
Swissprot	Q8GY11	8e-55	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	B9GQD9	1e-142	B9GQD9_POPTR; Uncharacterized protein
STRING	EOX95854	2e-93	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	3e-57	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Phytozome	Potri.002G164900.1
Entrez Gene	7457362

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]