PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G172200.1
Common NameTINYL13
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 178aa    MW: 19442.8 Da    PI: 6.518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G172200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-182068355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Potri.002G172200.1 20 YRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 68
                        9****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-121868IPR001471AP2/ERF domain
SMARTSM003807.7E-361982IPR001471AP2/ERF domain
PROSITE profilePS5103223.5911976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-311978IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-211977IPR016177DNA-binding domain
PRINTSPR003679.6E-132031IPR001471AP2/ERF domain
CDDcd000182.38E-302077No hitNo description
PRINTSPR003679.6E-135878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTRLQIPDTT RGSGTRHPAY RGVRKRRWGK WVSEIREPRK KSRIWLGSFP VPEMAAKAYD  60
VAAYCLKGRK AQLNFPEEAD DLPIPSTCTA RDIQAAAAKA AHSVLIPMKK SSETNNDGGG  120
DGEVAGDDFW GEIELPELLL SNSGYSWDSC GWNTTLASDN STWQPDGEGL QPSMACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-191178674Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G172200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559320.0EF155932.1 Populus trichocarpa TINY-like protein (TINYL13) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006387557.21e-122LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF023
SwissprotQ1ECI22e-60ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA9PJF31e-128A9PJF3_9ROSI; Uncharacterized protein
TrEMBLA9PL821e-128A9PL82_POPTR; TINY-like protein
STRINGPOPTR_0855s00200.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]